|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
java.lang.Objectjebl.evolution.sequences.State
public abstract class State
Method Summary | |
---|---|
int |
compareTo(java.lang.Object o)
|
double |
fractionEqual(State other)
Determine how much in common these potentially ambigous states have as a fraction between 0 and 1 2 non-ambiguous states will return 0. |
java.util.Set<State> |
getCanonicalStates()
|
java.lang.String |
getCode()
Returns the 1 letter code for this state. |
java.lang.String |
getFullName()
A descriptive name for this state. |
int |
getIndex()
|
java.lang.String |
getName()
Deprecated. you probably want to use getFullName() or getCode() . |
boolean |
isAmbiguous()
|
abstract boolean |
isGap()
|
boolean |
possiblyEqual(State other)
|
java.lang.String |
toString()
|
Methods inherited from class java.lang.Object |
---|
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Method Detail |
---|
public java.lang.String getCode()
public int getIndex()
public java.lang.String getFullName()
@Deprecated public java.lang.String getName()
getFullName()
or getCode()
.
getCode()
getCode()
getFullName()
public boolean isAmbiguous()
public java.util.Set<State> getCanonicalStates()
public boolean possiblyEqual(State other)
other
- another state to check for the quality with.
public int compareTo(java.lang.Object o)
compareTo
in interface java.lang.Comparable
public java.lang.String toString()
toString
in class java.lang.Object
public abstract boolean isGap()
public double fractionEqual(State other)
other
- another state to compare with
|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |