Uses of Package
jebl.evolution.trees

Packages that use jebl.evolution.trees
jebl.evolution.align Provides classes and interfaces for pairwise alignment of two sequences. 
jebl.evolution.coalescent   
jebl.evolution.io   
jebl.evolution.parsimony   
jebl.evolution.treemetrics   
jebl.evolution.trees   
jebl.evolution.treesimulation   
 

Classes in jebl.evolution.trees used by jebl.evolution.align
RootedTree
          A tree with a root (node with maximum height).
Tree
          A rooted or unrooted tree.
TreeBuilderFactory.DistanceModel
          Supported pairwise distance methods
TreeBuilderFactory.Method
          Supported methods for tree building
 

Classes in jebl.evolution.trees used by jebl.evolution.coalescent
RootedTree
          A tree with a root (node with maximum height).
 

Classes in jebl.evolution.trees used by jebl.evolution.io
Tree
          A rooted or unrooted tree.
 

Classes in jebl.evolution.trees used by jebl.evolution.parsimony
Tree
          A rooted or unrooted tree.
 

Classes in jebl.evolution.trees used by jebl.evolution.treemetrics
RootedTree
          A tree with a root (node with maximum height).
 

Classes in jebl.evolution.trees used by jebl.evolution.trees
CladeSystem
          Stores a set of unique clades for a tree
ClusteringTreeBuilder
          An abstract base class for clustering algorithms from pairwise distances
ConsensusTreeBuilder
          A TreeBuilder that builds a consensus tree for a set of trees on identical leaf sets.
ConsensusTreeBuilder.Method
          Supported consensus methods.
FilteredRootedTree
           
ReRootedTree.RootingType
           
RootedTree
          A tree with a root (node with maximum height).
SortedRootedTree.BranchOrdering
           
SplitSystem
          data structure for a set of splits
TransformedRootedTree.Transform
           
Tree
          A rooted or unrooted tree.
TreeBiPartitionInfo
          Work in progress
TreeBiPartitionInfo.DistanceNorm
           
TreeBuilder
           
TreeBuilderFactory.ConsensusMethod
          Supported consensus methods.
TreeBuilderFactory.DistanceModel
          Supported pairwise distance methods
TreeBuilderFactory.Method
          Supported methods for tree building
TreeChangeEvent
          Represents a change to a tree.
TreeSelectionChangeEvent
          Represents a change to the selected nodes in a tree.
 

Classes in jebl.evolution.trees used by jebl.evolution.treesimulation
RootedTree
          A tree with a root (node with maximum height).
 



http://code.google.com/p/jebl2/