jebl.evolution.trees
Class CalculateSplitRates
java.lang.Object
jebl.evolution.trees.CalculateSplitRates
public class CalculateSplitRates
- extends java.lang.Object
Created by IntelliJ IDEA.
User: msuchard
Date: Dec 18, 2006
Time: 1:13:51 PM
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Methods inherited from class java.lang.Object |
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
INDICATOR
public final java.lang.String INDICATOR
- See Also:
- Constant Field Values
RATE
public final java.lang.String RATE
- See Also:
- Constant Field Values
numRateBoxes
public int numRateBoxes
numTimeBoxes
public int numTimeBoxes
edgeFraction
public double edgeFraction
CalculateSplitRates
public CalculateSplitRates(NexusImporter importer)
loadTrees
public void loadTrees(int maxTrees,
int burnIn)
throws java.io.IOException,
ImportException
- Throws:
java.io.IOException
ImportException
displayStatistics
public void displayStatistics()
addTreeToDensityMap
public void addTreeToDensityMap(jebl.evolution.trees.CalculateSplitRates.DensityMap densityMap,
RootedTree tree)
displayIntervals
public void displayIntervals()
findTimeIntervals
public void findTimeIntervals()
main
public static void main(java.lang.String[] args)
- Parameters:
args
- args[0] = Beast tree log,
args[1] = max number of trees to read
args[2] = number of burnin trees to discard
args[3] = proportion file name,
args[4] = density map filename
http://code.google.com/p/jebl2/