jebl.evolution.distances
Class JukesCantorDistanceMatrix
java.lang.Object
jebl.evolution.distances.BasicDistanceMatrix
jebl.evolution.distances.JukesCantorDistanceMatrix
- All Implemented Interfaces:
- DistanceMatrix
public class JukesCantorDistanceMatrix
- extends BasicDistanceMatrix
Compute jukes-cantor corrected distance matrix for a set of aligned sequences.
Adapted from BEAST code by joseph.
- Version:
- $Id: JukesCantorDistanceMatrix.java 998 2009-04-09 03:06:19Z richardmoir $
- Author:
- Andrew Rambaut, Korbinian Strimmer, Joseph Heled
Methods inherited from class java.lang.Object |
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
JukesCantorDistanceMatrix
public JukesCantorDistanceMatrix(Alignment alignment,
ProgressListener progress)
throws CannotBuildDistanceMatrixException
- Throws:
CannotBuildDistanceMatrixException
JukesCantorDistanceMatrix
public JukesCantorDistanceMatrix(Alignment alignment,
ProgressListener progress,
boolean useTwiceMaximumDistanceWhenPairwiseDistanceNotCalculatable)
throws CannotBuildDistanceMatrixException
- Throws:
CannotBuildDistanceMatrixException
http://code.google.com/p/jebl2/