jebl.evolution.distances
Class F84DistanceMatrix

java.lang.Object
  extended by jebl.evolution.distances.BasicDistanceMatrix
      extended by jebl.evolution.distances.F84DistanceMatrix
All Implemented Interfaces:
DistanceMatrix

public class F84DistanceMatrix
extends BasicDistanceMatrix

Version:
$Id: F84DistanceMatrix.java 1036 2009-11-17 03:45:48Z matt_kearse $ See the detailed comment in HKYDistanceMatrix on the model and the formula used for estimating the distance.
Author:
Joseph Heled

Constructor Summary
F84DistanceMatrix(Alignment alignment)
           
F84DistanceMatrix(Alignment alignment, ProgressListener progress)
           
 
Method Summary
 
Methods inherited from class jebl.evolution.distances.BasicDistanceMatrix
getDistance, getDistance, getDistances, getSize, getSubmatrix, getTaxa
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

F84DistanceMatrix

public F84DistanceMatrix(Alignment alignment,
                         ProgressListener progress)

F84DistanceMatrix

public F84DistanceMatrix(Alignment alignment)


http://code.google.com/p/jebl2/