Uses of Interface
jebl.util.Attributable

Packages that use Attributable
jebl.evolution.alignments   
jebl.evolution.graphs   
jebl.evolution.sequences   
jebl.evolution.taxa   
jebl.evolution.trees   
jebl.util   
 

Uses of Attributable in jebl.evolution.alignments
 

Classes in jebl.evolution.alignments that implement Attributable
 class ConsensusSequence
           
 

Uses of Attributable in jebl.evolution.graphs
 

Subinterfaces of Attributable in jebl.evolution.graphs
 interface Edge
          Represents a node in a graph or tree.
 interface Graph
           
 interface Node
          Represents a node in a graph or tree.
 

Uses of Attributable in jebl.evolution.sequences
 

Subinterfaces of Attributable in jebl.evolution.sequences
 interface Sequence
          A biomolecular sequence.
 

Classes in jebl.evolution.sequences that implement Attributable
 class BasicSequence
          A default implementation of the Sequence interface.
 class CanonicalSequence
          A default implementation of the Sequence interface that converts sequence characters to States such that calling getString() will always return uppercase residues with nucleotide U residues converted to T
 class FilteredSequence
           
 class GaplessSequence
           
 class TranslatedSequence
           
 

Uses of Attributable in jebl.evolution.taxa
 

Classes in jebl.evolution.taxa that implement Attributable
 class Taxon
           
 

Uses of Attributable in jebl.evolution.trees
 

Subinterfaces of Attributable in jebl.evolution.trees
 interface RootedTree
          A tree with a root (node with maximum height).
 interface Tree
          A rooted or unrooted tree.
 

Classes in jebl.evolution.trees that implement Attributable
 class BaseEdge
          Common implementation of Attributable interface used by Nodes.
 class BaseNode
          Common implementation of Attributable interface used by Nodes.
 class CompactRootedTree
          A memory efficient rooted tree.
 class FilteredRootedTree
           
 class MutableRootedTree
          A simple rooted tree providing some ability to manipulate the tree.
 class ReRootedTree
           
 class RootedFromUnrooted
          Root an unrooted tree.
 class RootedSubtree
          A simple, immutable rooted tree implementation that is a subtree of an existing tree subtending a specified set of taxa..
 class SimpleRootedTree
          A simple, and initially immutable rooted tree implementation.
 class SimpleTree
          A basic implementation on an unrooted tree.
 class SortedRootedTree
           
 class TransformedRootedTree
          This RootedTree class wraps another RootedTree and transforms the branch lengths and node heights using various functions.
 

Uses of Attributable in jebl.util
 

Classes in jebl.util that implement Attributable
 class AttributableHelper
           
 



http://code.google.com/p/jebl2/