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Packages that use Attributable | |
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jebl.evolution.alignments | |
jebl.evolution.graphs | |
jebl.evolution.sequences | |
jebl.evolution.taxa | |
jebl.evolution.trees | |
jebl.util |
Uses of Attributable in jebl.evolution.alignments |
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Classes in jebl.evolution.alignments that implement Attributable | |
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class |
ConsensusSequence
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Uses of Attributable in jebl.evolution.graphs |
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Subinterfaces of Attributable in jebl.evolution.graphs | |
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interface |
Edge
Represents a node in a graph or tree. |
interface |
Graph
|
interface |
Node
Represents a node in a graph or tree. |
Uses of Attributable in jebl.evolution.sequences |
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Subinterfaces of Attributable in jebl.evolution.sequences | |
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interface |
Sequence
A biomolecular sequence. |
Classes in jebl.evolution.sequences that implement Attributable | |
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class |
BasicSequence
A default implementation of the Sequence interface. |
class |
CanonicalSequence
A default implementation of the Sequence interface that converts sequence characters to States such that calling getString() will always return uppercase residues with nucleotide U residues converted to T |
class |
FilteredSequence
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class |
GaplessSequence
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class |
TranslatedSequence
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Uses of Attributable in jebl.evolution.taxa |
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Classes in jebl.evolution.taxa that implement Attributable | |
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class |
Taxon
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Uses of Attributable in jebl.evolution.trees |
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Subinterfaces of Attributable in jebl.evolution.trees | |
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interface |
RootedTree
A tree with a root (node with maximum height). |
interface |
Tree
A rooted or unrooted tree. |
Classes in jebl.evolution.trees that implement Attributable | |
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class |
BaseEdge
Common implementation of Attributable interface used by Nodes. |
class |
BaseNode
Common implementation of Attributable interface used by Nodes. |
class |
CompactRootedTree
A memory efficient rooted tree. |
class |
FilteredRootedTree
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class |
MutableRootedTree
A simple rooted tree providing some ability to manipulate the tree. |
class |
ReRootedTree
|
class |
RootedFromUnrooted
Root an unrooted tree. |
class |
RootedSubtree
A simple, immutable rooted tree implementation that is a subtree of an existing tree subtending a specified set of taxa.. |
class |
SimpleRootedTree
A simple, and initially immutable rooted tree implementation. |
class |
SimpleTree
A basic implementation on an unrooted tree. |
class |
SortedRootedTree
|
class |
TransformedRootedTree
This RootedTree class wraps another RootedTree and transforms the branch lengths and node heights using various functions. |
Uses of Attributable in jebl.util |
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Classes in jebl.util that implement Attributable | |
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class |
AttributableHelper
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