Uses of Interface
jebl.evolution.graphs.Edge

Packages that use Edge
jebl.evolution.graphs   
jebl.evolution.trees   
 

Uses of Edge in jebl.evolution.graphs
 

Methods in jebl.evolution.graphs that return Edge
 Edge Graph.getEdge(Node node1, Node node2)
          Returns the Edge that connects these two nodes
 

Methods in jebl.evolution.graphs that return types with arguments of type Edge
 java.util.Set<Edge> Graph.getEdges()
           
 java.util.List<Edge> Graph.getEdges(Node node)
          Returns a list of edges connected to this node
 

Methods in jebl.evolution.graphs with parameters of type Edge
 Node[] Graph.getNodes(Edge edge)
          Returns an array of 2 nodes which are the nodes at either end of the edge.
 

Uses of Edge in jebl.evolution.trees
 

Classes in jebl.evolution.trees that implement Edge
 class BaseEdge
          Common implementation of Attributable interface used by Nodes.
 

Methods in jebl.evolution.trees that return Edge
 Edge RootedFromUnrooted.getEdge(Node node1, Node node2)
           
 Edge MutableRootedTree.getEdge(Node node1, Node node2)
          Returns the Edge that connects these two nodes
 Edge CompactRootedTree.getEdge(Node node1, Node node2)
           
 Edge SimpleRootedTree.getEdge(Node node1, Node node2)
          Returns the Edge that connects these two nodes
 Edge FilteredRootedTree.getEdge(Node node1, Node node2)
           
 Edge SimpleTree.getEdge(Node node1, Node node2)
          Returns the Edge that connects these two nodes
 Edge RootedSubtree.getEdge(Node node1, Node node2)
          Returns the Edge that connects these two nodes
 Edge MutableRootedTree.getParentEdge(Node node)
           
 Edge CompactRootedTree.getParentEdge(Node node)
           
 Edge SimpleRootedTree.getParentEdge(Node node)
           
 Edge RootedSubtree.getParentEdge(Node node)
           
 

Methods in jebl.evolution.trees that return types with arguments of type Edge
 java.util.Set<Edge> RootedFromUnrooted.getEdges()
           
 java.util.Set<Edge> MutableRootedTree.getEdges()
           
 java.util.Set<Edge> CompactRootedTree.getEdges()
           
 java.util.Set<Edge> SimpleRootedTree.getEdges()
           
 java.util.Set<Edge> FilteredRootedTree.getEdges()
           
 java.util.Set<Edge> SimpleTree.getEdges()
           
 java.util.Set<Edge> RootedSubtree.getEdges()
           
 java.util.List<Edge> RootedFromUnrooted.getEdges(Node node)
          Returns a list of edges connected to this node
 java.util.List<Edge> MutableRootedTree.getEdges(Node node)
          Returns a list of edges connected to this node
 java.util.List<Edge> CompactRootedTree.getEdges(Node node)
           
 java.util.List<Edge> SimpleRootedTree.getEdges(Node node)
          Returns a list of edges connected to this node
 java.util.List<Edge> FilteredRootedTree.getEdges(Node node)
           
 java.util.List<Edge> SimpleTree.getEdges(Node node)
          Returns a list of edges connected to this node
 java.util.List<Edge> RootedSubtree.getEdges(Node node)
          Returns a list of edges connected to this node
 java.util.Set<Edge> RootedFromUnrooted.getExternalEdges()
          The set of external edges.
 java.util.Set<Edge> MutableRootedTree.getExternalEdges()
          The set of external edges.
 java.util.Set<Edge> CompactRootedTree.getExternalEdges()
           
 java.util.Set<Edge> SimpleRootedTree.getExternalEdges()
          The set of external edges.
 java.util.Set<Edge> Tree.getExternalEdges()
           
 java.util.Set<Edge> FilteredRootedTree.getExternalEdges()
           
 java.util.Set<Edge> SimpleTree.getExternalEdges()
          The set of external edges.
 java.util.Set<Edge> RootedSubtree.getExternalEdges()
          The set of external edges.
 java.util.Set<Edge> RootedFromUnrooted.getInternalEdges()
          The set of internal edges.
 java.util.Set<Edge> MutableRootedTree.getInternalEdges()
          The set of internal edges.
 java.util.Set<Edge> CompactRootedTree.getInternalEdges()
           
 java.util.Set<Edge> SimpleRootedTree.getInternalEdges()
          The set of internal edges.
 java.util.Set<Edge> Tree.getInternalEdges()
           
 java.util.Set<Edge> FilteredRootedTree.getInternalEdges()
           
 java.util.Set<Edge> SimpleTree.getInternalEdges()
          The set of internal edges.
 java.util.Set<Edge> RootedSubtree.getInternalEdges()
          The set of internal edges.
 

Methods in jebl.evolution.trees with parameters of type Edge
 Node SimpleRootedTree.addNode(Edge edge)
          Adds a new node at the midpoint of the given edge
 Node[] RootedFromUnrooted.getNodes(Edge edge)
           
 Node[] MutableRootedTree.getNodes(Edge edge)
          Returns an array of 2 nodes which are the nodes at either end of the edge.
 Node[] CompactRootedTree.getNodes(Edge edge)
           
 Node[] SimpleRootedTree.getNodes(Edge edge)
          Returns an array of 2 nodes which are the nodes at either end of the edge.
 Node[] FilteredRootedTree.getNodes(Edge edge)
           
 Node[] SimpleTree.getNodes(Edge edge)
          Returns an array of 2 nodes which are the nodes at either end of the edge.
 Node[] RootedSubtree.getNodes(Edge edge)
          Returns an array of 2 nodes which are the nodes at either end of the edge.
static void SplitUtils.getSplit(java.util.List<Taxon> taxa, Tree tree, Edge edge, boolean[] split)
          get split for branch associated with internal node
 boolean SimpleTree.isExternal(Edge edge)
           
 void SimpleTree.setEdgeLength(Edge edge, double length)
          Change length of an existing edge.
 



http://code.google.com/p/jebl2/