|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Packages that use AminoAcidState | |
---|---|
jebl.evolution.sequences |
Uses of AminoAcidState in jebl.evolution.sequences |
---|
Methods in jebl.evolution.sequences that return AminoAcidState | |
---|---|
static AminoAcidState |
AminoAcids.getGapState()
|
static AminoAcidState |
AminoAcids.getState(char code)
|
static AminoAcidState |
AminoAcids.getState(int index)
|
static AminoAcidState |
AminoAcids.getState(java.lang.String code)
|
AminoAcidState |
GeneticCode.getTranslation(CodonState codonState)
Returns the state associated with AminoAcid represented by codonState. |
AminoAcidState |
GeneticCode.getTranslation(NucleotideState nucleotide1,
NucleotideState nucleotide2,
NucleotideState nucleotide3)
Returns the state associated with AminoAcid represented by the three nucleotides. |
AminoAcidState |
GeneticCode.getTranslation(java.lang.String nucleotides)
Returns the state associated with AminoAcid represented by the three nucleotides. |
static AminoAcidState |
AminoAcids.getUnknownState()
|
static AminoAcidState[] |
AminoAcids.toStateArray(byte[] indexArray)
|
static AminoAcidState[] |
AminoAcids.toStateArray(java.lang.String sequenceString)
|
static AminoAcidState[] |
Utils.translate(State[] states,
GeneticCode geneticCode)
Translates each of a given sequence of NucleotideState s or CodonState s
to the AminoAcidState corresponding to it under the given genetic code. |
Methods in jebl.evolution.sequences that return types with arguments of type AminoAcidState | |
---|---|
static java.util.List<AminoAcidState> |
AminoAcids.getStates()
|
Methods in jebl.evolution.sequences with parameters of type AminoAcidState | |
---|---|
java.util.Set<CodonState> |
GeneticCode.getCodonsForAminoAcid(AminoAcidState aminoAcidState)
|
static java.lang.String |
AminoAcids.getTripletCode(AminoAcidState state)
|
static boolean |
AminoAcids.isGap(AminoAcidState state)
|
static boolean |
AminoAcids.isUnknown(AminoAcidState state)
|
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |