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Interface Summary | |
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Sequence | A biomolecular sequence. |
Sequences | A set of sequence objects. |
SequenceType | Interface for sequences data types. |
StateClassification |
Class Summary | |
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AminoAcids | Uninstantiable utility class with only static methods. |
AminoAcidState | |
BasicSequence | A default implementation of the Sequence interface. |
CanonicalSequence | A default implementation of the Sequence interface that converts sequence characters to States such that calling getString() will always return uppercase residues with nucleotide U residues converted to T |
Codons | |
CodonState | As of 2007-07-30, instances of this class are only constructed for non-ambigous
nucleotide triplets - see Codons . |
FilteredSequence | |
GaplessSequence | |
GeneticCode | A set of standard genetic codes. |
Nucleotides | Uninstantiable utility class with only static methods. |
NucleotideState | |
SequenceTester | |
SequenceType.Utils | |
State | |
StateClassification.Default | |
TranslatedSequence | |
Utils |
Exception Summary | |
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SequenceStateException |
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