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java.lang.Objectjebl.evolution.substmodel.AbstractRateMatrix
jebl.evolution.substmodel.AminoAcidModel
jebl.evolution.substmodel.WAG
public class WAG
WAG model of amino acid evolution (S. Whelan and N. Goldman 2000)
Constructor Summary | |
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WAG(double[] f)
constructor |
Method Summary | |
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static double[] |
getOriginalFrequencies()
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static void |
getOriginalFrequencies(double[] f)
get the frequencies of the original data set that formed the basis for the estimation of the rate matrix |
java.lang.String |
getUniqueName()
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Methods inherited from class jebl.evolution.substmodel.AbstractRateMatrix |
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getDimension, getEquilibriumFrequencies, getEquilibriumFrequency, getRelativeRates, getSequenceType, getTransitionProbabilities, getTransitionProbability, rebuild, scale, setDistance, setDistanceTranspose, setParametersNoScale |
Methods inherited from class java.lang.Object |
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equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public WAG(double[] f)
f
- amino acid frequenciesMethod Detail |
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public static void getOriginalFrequencies(double[] f)
f
- array where amino acid frequencies will be storedpublic static double[] getOriginalFrequencies()
public java.lang.String getUniqueName()
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