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Packages that use jebl.evolution.trees | |
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jebl.evolution.align | Provides classes and interfaces for pairwise alignment of two sequences. |
jebl.evolution.coalescent | |
jebl.evolution.io | |
jebl.evolution.parsimony | |
jebl.evolution.treemetrics | |
jebl.evolution.trees | |
jebl.evolution.treesimulation |
Classes in jebl.evolution.trees used by jebl.evolution.align | |
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RootedTree
A tree with a root (node with maximum height). |
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Tree
A rooted or unrooted tree. |
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TreeBuilderFactory.DistanceModel
Supported pairwise distance methods |
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TreeBuilderFactory.Method
Supported methods for tree building |
Classes in jebl.evolution.trees used by jebl.evolution.coalescent | |
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RootedTree
A tree with a root (node with maximum height). |
Classes in jebl.evolution.trees used by jebl.evolution.io | |
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Tree
A rooted or unrooted tree. |
Classes in jebl.evolution.trees used by jebl.evolution.parsimony | |
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Tree
A rooted or unrooted tree. |
Classes in jebl.evolution.trees used by jebl.evolution.treemetrics | |
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RootedTree
A tree with a root (node with maximum height). |
Classes in jebl.evolution.trees used by jebl.evolution.trees | |
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CladeSystem
Stores a set of unique clades for a tree |
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ClusteringTreeBuilder
An abstract base class for clustering algorithms from pairwise distances |
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ConsensusTreeBuilder
A TreeBuilder that builds a consensus tree for a set of trees on identical leaf sets. |
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ConsensusTreeBuilder.Method
Supported consensus methods. |
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FilteredRootedTree
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ReRootedTree.RootingType
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RootedTree
A tree with a root (node with maximum height). |
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SortedRootedTree.BranchOrdering
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SplitSystem
data structure for a set of splits |
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TransformedRootedTree.Transform
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Tree
A rooted or unrooted tree. |
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TreeBiPartitionInfo
Work in progress |
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TreeBiPartitionInfo.DistanceNorm
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TreeBuilder
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TreeBuilderFactory.ConsensusMethod
Supported consensus methods. |
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TreeBuilderFactory.DistanceModel
Supported pairwise distance methods |
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TreeBuilderFactory.Method
Supported methods for tree building |
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TreeChangeEvent
Represents a change to a tree. |
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TreeSelectionChangeEvent
Represents a change to the selected nodes in a tree. |
Classes in jebl.evolution.trees used by jebl.evolution.treesimulation | |
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RootedTree
A tree with a root (node with maximum height). |
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