jebl.evolution.align.scores
Interface ScoreMatrix
- All Known Implementing Classes:
- AminoAcidScores, Blosum45, Blosum50, Blosum55, Blosum60, Blosum62, Blosum65, Blosum70, Blosum75, Blosum80, Blosum85, Blosum90, Hamming, JukesCantor, NucleotideScores, Pam100, Pam110, Pam120, Pam130, Pam140, Pam150, Pam160, Pam170, Pam180, Pam190, Pam200, Pam210, Pam220, Pam230, Pam240, Pam250, Scores, SubstScoreMatrix
public interface ScoreMatrix
- Version:
- $Id: ScoreMatrix.java 360 2006-06-22 07:42:48Z pepster $
- Author:
- Alexei Drummond
getName
java.lang.String getName()
- Returns:
- human readable name
getScore
float getScore(char x,
char y)
- Returns:
- the score for matching char x with char y
getAlphabet
java.lang.String getAlphabet()
- Returns:
- a string containing the valid characters for this score matrix.
http://code.google.com/p/jebl2/