jebl.evolution.align.scores
Class AminoAcidScores

java.lang.Object
  extended by jebl.evolution.align.scores.Scores
      extended by jebl.evolution.align.scores.AminoAcidScores
All Implemented Interfaces:
ScoreMatrix
Direct Known Subclasses:
Blosum45, Blosum50, Blosum55, Blosum60, Blosum62, Blosum65, Blosum70, Blosum75, Blosum80, Blosum85, Blosum90, Pam100, Pam110, Pam120, Pam130, Pam140, Pam150, Pam160, Pam170, Pam180, Pam190, Pam200, Pam210, Pam220, Pam230, Pam240, Pam250

public class AminoAcidScores
extends Scores

Version:
$Id: AminoAcidScores.java 360 2006-06-22 07:42:48Z pepster $
Author:
Alexei Drummond

Field Summary
 
Fields inherited from class jebl.evolution.align.scores.Scores
score
 
Constructor Summary
AminoAcidScores()
           
AminoAcidScores(float m, float n)
           
 
Method Summary
 java.lang.String getAlphabet()
           
 java.lang.String getName()
           
 
Methods inherited from class jebl.evolution.align.scores.Scores
duplicate, forMatrix, getMatrixString, getScore, includeAdditionalCharacters, includeGaps, toString
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Constructor Detail

AminoAcidScores

public AminoAcidScores()

AminoAcidScores

public AminoAcidScores(float m,
                       float n)
Method Detail

getName

public java.lang.String getName()
Returns:
human readable name

getAlphabet

public final java.lang.String getAlphabet()
Returns:
a string containing the valid characters for this score matrix.


http://code.google.com/p/jebl2/